Sample Summary Page
The 16S Metagenomics app provides an overview of statistics per sample on the sample pages. You can also download the Summary Report as a PDF.
| • | Sample Results |
The sample results section contains a PDF Summary Report that provides information about the classification rate and top sample classifications by taxonomic level. The sample results section also contains a CSV Classification Summary, which shows the aggregate classification counts for the sample.
| • | Sample Information |
The Sample Information table provides basic primary analysis information for the sample.
|
Statistic |
Definition |
|---|---|
|
Number reads PF |
The total number of reads with an index sequence matching this sample that passed quality filtering. |
| • | Classification Statistics |
The Classification Statistics section provides information on the classification rate by taxonomic level.
|
Statistic |
Definition |
|---|---|
|
Reads PF Classified to Taxonomic Level |
The total number of PF reads for this sample that were classified at the given taxonomic level |
|
% Reads PF Classified to Taxonomic Level |
(# Reads PF Classified to Taxonomic Level / # Reads PF) * 100 |
| • | Sunburst Classification Chart |
The sunburst chart presents statistics about the relative abundance and taxonomic hierarchy of classifications in the sample.
|
Statistic |
Definition |
|---|---|
|
Total reads |
# Reads PF |
|
% Total reads |
(# Reads PF Classified in taxonomic category / # Reads PF) * 100 |
|
% [parent category] reads |
(# Reads PF classified in taxonomic category / # Reads PF classified in parent taxonomic category) * 100 |
| • | Top 20 Classification Results by Taxonomic Level |
The column chart shows a comparison of the relative abundance of classifications at each taxonomic level. The results exclude reads unclassified at that taxonomic level.
|
Statistic |
Definition |
|---|---|
|
Total reads |
# Reads PF |
|
% Reads classified to level |
(# Reads PF Classified in taxonomic category / # Reads PF classified to taxonomic level) * 100 |
|
% total reads |
(# Reads PF classified in taxonomic category / # Reads PF) * 100 |