DRAGEN Host Software

You use the DRAGEN host software program dragen to build and load reference genomes, and then to analyze sequencing data by decompressing the data, mapping, aligning, sorting, duplicate marking with optional removal, and variant calling.

Invoke the software using the dragen command. The command-line options are described in the following sections.

Command-line options can also be set in a configuration file. For more information on configuration files, see Configuration Files . If an option is set in the configuration file and is also specified on the command-line, the command-line option overrides the configuration file.