bcl2fastq Conversion Software Support


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Custom Protocol Selector

Generate end-to-end documentation tailored to your experiment.

Library Prep and Array Kit Selector

Determine the best kit for your project type, starting material, and method or application.

Sequencing Coverage Calculator

Determine reagents and sequencing runs for your desired coverage.


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Maximize the effectiveness of your Illumina system, train new employees, or learn the latest techniques and best practices. We offer support webinars, online courses, expert video tips, and instructor-led trainings.

Featured Training
Bcl2Fastq v2+: Introduction

Bcl2fastq v2+ and the configurable options that this command line program allows.

Sequencing Data Analysis: Introduction to Key Concepts

Presentation and discussion on the concepts and general approaches used in Illumina sequencing data analysis. 

BaseSpace Sequence Hub: FASTQ Processing Tools for Data Analysis

Describes FASTQ files, generation tools, and file processing.