Use the compatible version of the HiSeq Control Software (HCS) and Real-Time Analysis (RTA) software for your kits. The SBS kit pairs with either cluster kit, single read (SR) or paired-end (PE). For kit details, see HiSeq 3000 Reagent Kits.

Cluster Kit	Software Version
HiSeq 3000/4000 SR Cluster Kit	HCS v3.3.52/RTA v2.7, or later
HiSeq 3000/4000 PE Cluster Kit	HCS v3.3.20/RTA v2.3, or later
HiSeq 3000/4000 SBS Kit	HCS v3.3.20/RTA v2.3, or later

Data Analysis

Use Sequencing Analysis Viewer or BaseSpace Sequence Hub to monitor real-time quality metrics during a run.

To analyze sequencing data, choose from the following options.

BaseSpace Sequence Hub
bcl2fastq2 Conversion Software—Convert sequencing output for third-party analysis solutions when sequencing in Standalone mode.

HiSeq 3000 Compatible Products

HiSeq 3000 System

Compatible Products

Cluster Generation

Run Components

Data Analysis

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HiSeq 3000 Compatible Products

HiSeq 3000 System

Compatible Products

Cluster Generation

Run Components

Data Analysis

Contact Us

Technical Support

Share With Tech Support

Other Support

Contact Us

Technical Support

techsupport@illumina.com

Other Support