MiSeq Support


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Custom Protocol Selector

Generate end-to-end documentation tailored to your experiment.

Library Prep and Array Kit Selector

Determine the best kit for your project type, starting material, and method or application.

Local Run Manager Module Selector

Find the analysis modules compatible with your instrument and Local Run Manager configuration.

Sequencing Coverage Calculator

Determine reagents and sequencing runs for your desired coverage.


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Maximize the effectiveness of your Illumina system, train new employees, or learn the latest techniques and best practices. We offer support webinars, online courses, expert video tips, and instructor-led trainings.

Featured Training
MiSeq: How to Start a Run

Overview of MiSeq run setup options, how to prepare the MiSeq reagent cartridge and load libraries, and the steps to start a sequencing run with MiSeq Control Software (MCS).

Amplicon Sequencing: Introduction

Introduction to the end-to-end workflow for an amplicon sequencing project.

Sequencing: Optimizing Cluster Density

Learn tips to optimize cluster density.