MiSeq Documentation
MiSeq System
Documentation
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System Documents
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DATE
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Denature and Dilute Protocol Generator
Generate ProtocolInstructions for denaturing and diluting prepared libraries for sequencing.
Feb 28, 2025
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MiSeq System Custom Primers Guide
DownloadInstructions for using custom primers for sequencing on the MiSeq System.
< 1 MB
Mar 13, 2016
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Supporting Documents
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DATE
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< 1 MB
Jul 2, 2013
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MiSeq Sample Sheet Quick Reference Guide
DownloadGuidance for setting up sample sheets for sequencing on the MiSeq.
< 1 MB
Aug 14, 2013
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MiSeq Run Folder Quick Reference Card
DownloadInstructions for using the MiSeq output and analysis folders.
< 1 MB
Apr 18, 2014
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Cluster Optimization Overview
View Online HelpStrategies for optimizing cluster density and preventing and diagnosing clustering issues on Illumina flow cells.
Apr 26, 2021
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Indexed Sequencing Overview
View Online HelpThe sequencing process for single- and dual-indexed runs on Illumina instruments.
Aug 13, 2024
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Security and Networking
View Online HelpGuidelines for managing the security of the control computer on your sequencing system. Use these guidelines to configure your system and ensure a more secure operating environment.
It is strongly recommended that you review this documentation to keep your instrument secure.
This site is updated frequently. Make sure to visit this site often for the latest security recommendations.