Local Run Manager Training

  • Title

    DATE/LENGTH


  • Local Run Manager v1

    This course provides an introduction to the Local Run Manager v1 software for MiniSeq instruments using MiniSeq Control Software v1. Topics include: its purpose, how to access the software, and the analysis workflows. It also shows the steps to set up a sequencing run and view analysis results.

    15 min


  • Local Run Manager v2

    This course shows you how to get started using the Local Run Manager v2 software to set up your sequencing runs and view analysis results. Local Run Manager v2 is available for MiniSeq instruments using MiniSeq Control Software v2 or later, NextSeq 500/550 instruments using NextSeq Control Software v4 and later, and MiSeq instruments using MiSeq Control Software v3.

    Languages: French, Italian, German, SpanishChinese (Simplified)

    20 min


  • Local Run Manager v3

    This course shows you how to get started using the Local Run Manager v3 software to set up your sequencing runs and view analysis results. Local Run Manager v3 is available for MiSeq instruments using MiSeq Control Software v4 and later.

    20 min


  • MiSeq: How to Start a Run

    After completing this course you will be able to identify the MiSeq run setup options, describe how to prepare the MiSeq reagent cartridge and load libraries, and list the steps to start a sequencing run with MiSeq Control Software (MCS).

    20 min


  • NextSeq: How to Start a Run

    By the end of this course, you will be able to: identify the steps to start a run on the NextSeq, describe how to prepare the reagent cartridge, and start a sequencing run using NCS.

    20 min


  • iSeq 100: How to Start a Run

    This course introduces the steps to start an iSeq sequencing run, prepare the consumables, and use the iSeq Control Software.

    Languages: French, Italian, German, SpanishChinese (Simplified)

    20 min


  • BaseSpace Sequence Hub: FASTQ Processing Tools for Data Analysis

    Recorded Webinar (August 2020) | FASTQ files store biological sequence and quality information and are key for downstream data analysis pipelines. Several steps are necessary during FASTQ generation to ensure optimal data analysis. This webinar is targeted at new and intermediate users including biologists intending to understand output of basic bioinformatics tools used for processing FASTQs. We will focus on BaseSpace Sequence Hub tools such as FASTQC and FASTQ toolkit*. 

    We will cover the following topics: What is a FASTQ file; An overview of Illumina FASTQ generation tools; FASTQ processing such as adapter trimming, masking, quality trimming, read stitching etc; and Highlight the differences between Illumina run performance metrics and output generated by third party tools such as FASTQC.

    *BaseSpace Labs Apps are developed using an accelerated development process in order to make them available to BaseSpace users faster than conventional Illumina Apps. Illumina may provide support for BaseSpace labs Apps at its sole discretion. BaseSpace Labs Apps are provided AS-IS without any warranty of any kind. BaseSpace Labs Apps are used at the user’s sole risk. Illumina is not responsible for any loss of data, incorrect results, or any costs, liabilities, or damages that may result from the use of a BaseSpace Labs App.


  • Local Run Manager v2 (Research Use Only): Introduction - On- and Off-Instrument

    Recorded Webinar (January 2021) | Local Run Manager is a Windows-based software for Illumina benchtop sequencing data that includes local analysis options as well as run and user management. It will provide an overview of the Research Use Only (RUO) version of Local Run Manager v2 including the off-instrument version and the versions bundled with instrument control software. This webinar does not cover the Dx versions of the software. We cover the following topics: features of Local Run Manager v2, available versions and analysis options, how to set up runs and analyze data, interaction with on-instrument control software and comparison to other Illumina analysis software.


  • Local Run Manager v3 with MiSeq Control Software v4: Introduction

    Recorded Webinar (February 2021) | Launching with the MiSeq Windows 10 update and MiSeq Control Software version 4, Local Run Manager version 3 is the Windows-based software solution for run management and data analysis. Local Run Manager v3 replaces MiSeq Reporter, and this webinar provides an introduction to the features of Local Run Manager v3. We will cover the following topics: features of Local Run Manager v3, how to set up runs and analyze data, available analysis workflows, and interaction with MiSeq Control Software V4


  • Introduction to Local Run Manager v3 with MiSeq Control Software v4 (French)

    Upcoming Webinar | Avec la mise à jour du MiSeq vers Windows 10 et la version 4 du logiciel "MiSeq Control software", Local Run Manager version 3 est la nouvelle version pour la gestion des runs et des analyses. Local Run Manager v3 remplace donc MiSeq Reporter. Ce webinaire fournit une introduction aux fonctionnalités de Local Run Manager v3. Nous aborderons les sujets suivants : 1) caractéristiques de Local Run Manager v3, 2) comment mettre en place des runs et analyser leurs données, 3) les Flux d'analyse disponibles, 4) interaction avec le logiciel de contrôle MiSeq v4.

    Mar 05, 2021 GMT


  • Introduction to Local Run Manager v3 with MiSeq Control Software v4 (German)

    Upcoming Webinar | Local Run Manager Version 3 wird mit dem MiSeq Windows 10-Update und der MiSeq-ControlSoftware Version 4 eingeführt und ist die Windows-basierte Softwarelösung für die Laufverwaltung und Datenanalyse. Local Run Manager v3 ersetzt MiSeq Reporter und dieses Webinar bietet eine Einführung in die Funktionen von Local Run Manager v3. Wir werden die folgenden Themen behandeln: 1) funktionen von Local Run Manager v3, 2) einrichten von Läufen und Analysieren von Daten, 3) verfügbare Analyse-Workflows, 4) interaktion mit der MiSeq-ControlSoftware v4.

    Mar 12, 2021 GMT


  • Introduction to Local Run Manager v3 with MiSeq Control Software v4 (Italian)

    Upcoming Webinar | Con l’aggiornamento del MiSeq a Windows 10 e l’upgrade alla versione 4 del MiSeq Control Software, è stata rilasciata la versione 3 di Local Run Manager, soluzione software basata su Windows che consente di impostare la corsa e gestire l’analisi dei dati.  MiSeq reporter viene così sostituito dalla versione 3 di Local Run Manager e questo webinair fornisce un’introduzione alle principali caratteristiche. Tratteremo i seguenti argomenti: 1) caratteristiche di Local Run Manager – versione 3, 2) come impostare una corsa e analizzare i dati, 3) workflow disponibili per l' analisi, 4) interazione con il MiSeq Control Software versione 4.

    Mar 19, 2021 GMT


  • Introduction to Local Run Manager v3 with MiSeq Control Software v4 (Spanish)

    Upcoming Webinar | Con el lanzamiento de la actualización de MiSeq Windows 10 y MiSeq Control Software v4, Local Run Manager v3 es la solución de software de Windows para la gestión de carreras y análisis de datos. Local Run Manager v3 reemplaza MiSeq Reporter, y este webinar ofrece una introducción a las funciones de Local Run Manager v3. Cubriremos los siguientes temas: 1) características de Local Run Manager v3, 2) cómo configurar carreras y analizar datos, 3) flujos de trabajo de análisis disponibles, 4) Interacción con MiSeq Control Software v4.

    Mar 26, 2021 GMT


  • Introduction of MiSeq Control Software v4 and Local Run Manager v3 (Asia Pacific - Japanese)

    Upcoming Webinar | 2011年の発売以降多くのお客様にご愛顧いただいておりますMiSeqですが、この度イルミナではWindows 10へのアップデートに伴い、インターフェースを大幅に刷新した新しい装置コントロールソフトウェアMiSeq Control Software (MCS) v4をリリースいたしました。

     加えて、MCS v4のリリースに伴い、MiSeqには装置内蔵ソフトウェア Local Run Manager(LRM)の最新版、LRM v3が搭載されます。2019年4月22日のウェビナーでもご紹介しました通り、LRMには、これまでMiSeq Reporterが担っていた装置内蔵の解析ソフトウェアとしての機能に加え、ラン条件の設定機能も搭載されており、Illumina Experiment Manager(IEM)でのサンプルシート作成が不要となるなど、多くの変更点がございます。

     本ウェビナーでは、MCS v4およびLRM v3の概要に加え、ラン条件の設定方法や設定時の注意点、また、解析結果の確認方法や再解析の方法等など、実際の運用に関する部分も交えて、幅広くご紹介いたします。

    Apr 02, 2021 JST


  • Introduction to Local Run Manager v3 with MiSeq Control Software v4

    Upcoming Webinar | Please join us for an introduction to Local Run Manager v3, the Windows-based software solution for run management and data analysis. This new version of the software will be launched along with the MiSeq Windows 10 update and MiSeq Control Software version 4. This webinar will cover the following topics: We will cover the following topics: features of Local Run Manager v3, how to set up runs and analyze data, available analysis workflows, and interaction with MiSeq Control Software V4

    Mar 26, 2021 SGT


  • Local Run Manager v3 with MiSeq Control Software v4: Introduction

    Upcoming Webinar | Launching with the MiSeq Windows 10 update and MiSeq Control Software version 4, Local Run Manager version 3 is the Windows-based software solution for run management and data analysis. Local Run Manager v3 replaces MiSeq Reporter, and this webinar provides an introduction to the features of Local Run Manager v3. We will cover the following topics: features of Local Run Manager v3, how to set up runs and analyze data, available analysis workflows, and interaction with MiSeq Control Software V4

    Apr 13, 2021 PST